Integrations

Schema modules

Additional registries can be found here:

• bionty: Basic biological entities, coupled to public ontologies

• wetlab: Basic wetlab entities

• clinicore: Basic clinical entities

• cellregistry: A registry for single cells

• omop: OMOP Common Data Model

Please reach out to have your schema module featured.

Git

Sync tracked scripts in lamindb with git commits: guide

MLOps

• Weights & Biases

• Hugging Face paths are supported: ln.Artifact("hf://datasets/laminlabs/repo/sharded_parquet")

Workflow managers

• redun

• Nextflow

• Snakemake

Array stores

• tiledbsoma: inhouse guide or cellxgene

• DuckDB

Visualization tools

• Vitessce

ELN systems

• Sync schema and data from your Benchling registries within our team/enterprise plan. Reach out to learn more!