lamindb

A data framework for biology.

Tracking notebooks & scripts.

track([transform, params, new_run, path, ...])	Initiate a run with tracked data lineage.
finish([ignore_non_consecutive])	Finish a tracked run.

Registries.

Artifact()	Datasets & models stored as files, folders, or arrays.
Transform()	Data transformations.
ULabel()	Universal labels.
Run()	Runs of transforms.
User()	Users.
Storage()	Storage locations.
Feature()	Dataset dimensions.
FeatureSet	alias of Schema
Param()	Parameters of runs & models.
Collection()	Collections of artifacts.
Project()	Projects.
Reference()	References such as internal studies, papers, documents, or URLs.
Person()	Persons.

Key functionality.

connect([instance])	Connect to an instance.
Curator()	Dataset curator.
view([df, limit, modules, registries])	View metadata.
save(records[, ignore_conflicts])	Bulk save to registries & storage.

Modules and settings.

integrations	Integrations.
context	Global run context (Context).
settings	Global settings (Settings).
setup	Setup & configure LaminDB.
UPath(*args[, protocol])	Paths: low-level key-value access to files/objects.
base	Base library.
core	Core library.